Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs339321 chr6:117192190 C/T 5.48E-5 119 38.23 50.28 19.03 KM Plot
THYM rs339323 chr6:117193512 G/A 4.73E-5 119 38.23 50.28 19.03 KM Plot
THYM rs339356 chr6:117197378 T/A 4.73E-5 119 38.23 50.28 19.03 KM Plot
THYM rs339358 chr6:117160010 T/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339359 chr6:117160693 G/A 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs33936237 chr9:97221877 C/CT 0.000113 114 39.75 44.3 17.03 KM Plot
THYM rs339365 chr6:117172218 A/G 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339366 chr6:117174591 C/T 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs33971128 chr5:180119615 AG/A 0 116 46.43 32.7 4.13 KM Plot
THYM rs34010978 chr5:144509298 G/A 7.18E-13 117 38.83 50.47 6 KM Plot
THYM rs34014984 chr14:80405936 AT/A 1.36E-6 118 9.85 38.58 42.82 KM Plot
THYM rs34063386 chr6:163041271 T/C 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs34078365 chr1:210548000 T/TCA 0.000272 118 46.6 32.33 NA KM Plot
THYM rs34091241 chr2:112442242 G/A 0 118 40.3 40.67 4.13 KM Plot
THYM rs34102110 chr5:2350089 AG/A 0.000136 117 41.77 35.77 45.13 KM Plot