Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs339321 | chr6:117192190 | C/T | 5.48E-5 | 119 | 38.23 | 50.28 | 19.03 | KM Plot |
THYM | rs339323 | chr6:117193512 | G/A | 4.73E-5 | 119 | 38.23 | 50.28 | 19.03 | KM Plot |
THYM | rs339356 | chr6:117197378 | T/A | 4.73E-5 | 119 | 38.23 | 50.28 | 19.03 | KM Plot |
THYM | rs339358 | chr6:117160010 | T/C | 4.73E-5 | 118 | 38.33 | 50.28 | 19.03 | KM Plot |
THYM | rs339359 | chr6:117160693 | G/A | 4.73E-5 | 118 | 38.33 | 50.28 | 19.03 | KM Plot |
THYM | rs33936237 | chr9:97221877 | C/CT | 0.000113 | 114 | 39.75 | 44.3 | 17.03 | KM Plot |
THYM | rs339365 | chr6:117172218 | A/G | 4.73E-5 | 118 | 38.33 | 50.28 | 19.03 | KM Plot |
THYM | rs339366 | chr6:117174591 | C/T | 4.73E-5 | 118 | 38.33 | 50.28 | 19.03 | KM Plot |
THYM | rs33971128 | chr5:180119615 | AG/A | 0 | 116 | 46.43 | 32.7 | 4.13 | KM Plot |
THYM | rs34010978 | chr5:144509298 | G/A | 7.18E-13 | 117 | 38.83 | 50.47 | 6 | KM Plot |
THYM | rs34014984 | chr14:80405936 | AT/A | 1.36E-6 | 118 | 9.85 | 38.58 | 42.82 | KM Plot |
THYM | rs34063386 | chr6:163041271 | T/C | 0.000281 | 118 | 46.23 | 27.33 | 25.4 | KM Plot |
THYM | rs34078365 | chr1:210548000 | T/TCA | 0.000272 | 118 | 46.6 | 32.33 | NA | KM Plot |
THYM | rs34091241 | chr2:112442242 | G/A | 0 | 118 | 40.3 | 40.67 | 4.13 | KM Plot |
THYM | rs34102110 | chr5:2350089 | AG/A | 0.000136 | 117 | 41.77 | 35.77 | 45.13 | KM Plot |